exRNAdisease

Entry Detail

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General Information

Database ID: exR0783803 RNA Name: CYTOR RNA Type: lncRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 87454781 End Site(bp): 87636740 External Links: ENSG00000222041

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ADGRG2 chrX 18989307 19122637 - AHCY chr20 34280268 34311802 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-105-5p chrX 152394458 152394480 - hsa-miR-128-3p chr2 135665446 135665466 + hsa-miR-193a-3p chr17 31560050 31560071 + hsa-miR-376c-3p chr14 101039732 101039752 + hsa-miR-193b-3p chr16 14304017 14304038 + hsa-miR-513a-5p chrX 147213538 147213555 - hsa-miR-3681-3p chr2 12199174 12199195 + hsa-miR-642b-3p chr19 45674941 45674962 - hsa-miR-2467-3p chr2 239351732 239351753 - hsa-miR-642a-3p chr19 45674978 45674999 + hsa-miR-873-3p chr9 28888889 28888910 - hsa-miR-216a-3p chr2 55988981 55989002 - hsa-miR-7853-5p chr6 6169380 6169400 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC017002.1 chr2 111607841 111612518 + AC133644.3 chr2 87455476 87767359 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.