exRNAdisease

Entry Detail

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General Information

Database ID: exR0783890 RNA Name: JPX RNA Type: lncRNA Chromosome: chrX Starnd: + Coordinate: Start Site(bp): 73944182 End Site(bp): 74070408 External Links: ENSG00000225470

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC092329.3 chr19 23222755 23274221 - AC138811.2 chr16 18788063 18801519 - ADGRL2 chr1 81306160 81992436 + AIFM1 chrX 130129362 130165887 - AL590764.2 chrX 71103987 71111575 - ACOT9 chrX 23701055 23766475 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-145-5p chr5 149430661 149430683 + hsa-miR-944 chr3 189829975 189829996 + hsa-miR-1301-3p chr2 25328651 25328674 - hsa-miR-5047 chr17 64501230 64501250 - hsa-miR-5195-3p chr14 106850910 106850930 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009446.1 chr8 71675300 71702786 + AC064802.1 chr8 114282067 114295839 + AC092329.1 chr19 23257255 23274232 - AC092329.4 chr19 23259906 23274251 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.