exRNAdisease

Entry Detail

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General Information

Database ID: exR0783930 RNA Name: LINC00324 RNA Type: lncRNA Chromosome: chr17 Starnd: - Coordinate: Start Site(bp): 8220642 End Site(bp): 8224043 External Links: ENSG00000178977

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACTG1 chr17 81509971 81523847 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-154-3p chr14 101059805 101059826 + hsa-miR-362-5p chrX 50008968 50008991 + hsa-miR-487a-3p chr14 101052494 101052515 + hsa-miR-516b-5p chr19 53736860 53736881 + hsa-miR-769-5p chr19 46018961 46018982 + hsa-miR-214-5p chr1 172138857 172138878 - hsa-miR-151a-5p chr8 140732623 140732643 - hsa-miR-545-5p chrX 74287164 74287185 - hsa-miR-151b chr14 100109438 100109455 - hsa-miR-3126-5p chr2 69103691 69103712 + hsa-miR-3164 chr11 69083185 69083206 + hsa-miR-500b-5p chrX 50010682 50010699 + hsa-miR-3200-5p chr22 30731569 30731590 + hsa-miR-6820-3p chr22 37967603 37967624 + hsa-miR-6875-5p chr7 100868041 100868061 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.