exRNAdisease

Entry Detail

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General Information

Database ID: exR0784092 RNA Name: MIR4435-2HG RNA Type: lncRNA Chromosome: chr2 Starnd: - Coordinate: Start Site(bp): 111006015 End Site(bp): 111523376 External Links: ENSG00000172965

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-105-5p chrX 152394458 152394480 - hsa-miR-1-3p chr18 21829015 21829036 - hsa-miR-128-3p chr2 135665446 135665466 + hsa-miR-136-5p chr14 100884716 100884738 + hsa-miR-193a-3p chr17 31560050 31560071 + hsa-miR-206 chr6 52144401 52144422 + hsa-miR-193b-3p chr16 14304017 14304038 + hsa-miR-503-5p chrX 134546371 134546393 - hsa-miR-513a-5p chrX 147213538 147213555 - hsa-miR-873-5p chr9 28888925 28888945 - hsa-miR-3611 chr10 35079609 35079629 - hsa-miR-3681-3p chr2 12199174 12199195 + hsa-miR-4525 chr17 82668281 82668301 - hsa-miR-2467-3p chr2 239351732 239351753 - hsa-miR-5010-5p chr17 42514208 42514229 + hsa-miR-873-3p chr9 28888889 28888910 - hsa-miR-216a-3p chr2 55988981 55989002 - hsa-miR-7853-5p chr6 6169380 6169400 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC017002.1 chr2 111607841 111612518 + AC133644.3 chr2 87455476 87767359 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.