exRNAdisease

Entry Detail

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General Information

Database ID: exR0784119 RNA Name: POLR2J4 RNA Type: lncRNA Chromosome: chr7 Starnd: - Coordinate: Start Site(bp): 43940895 End Site(bp): 44019175 External Links: ENSG00000214783

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC093668.1 chr7 102541501 102592444 - AC105052.1 chr7 102582523 102642869 - AC105052.3 chr7 102637049 102671641 - AKR1A1 chr1 45550543 45570049 + ACAT1 chr11 108116695 108147603 + AKR1B1 chr7 134442356 134459284 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-199a-5p chr1 172144592 172144614 - hsa-miR-147a chr9 120244985 120245004 - hsa-miR-199b-5p chr9 128244783 128244805 - hsa-miR-214-3p chr1 172138816 172138837 - hsa-miR-761 chr1 51836375 51836396 - hsa-miR-3619-5p chr22 46091059 46091080 + hsa-miR-1343-3p chr11 34941888 34941909 + hsa-miR-6783-3p chr17 44934618 44934639 - hsa-miR-5100 chr10 42997630 42997651 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004951.4 chr7 43951910 44019151 - AC007952.4 chr17 19112000 19112636 - AC009292.2 chr15 67832725 67873866 + AC067852.1 chr17 42536510 42562062 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.