exRNAdisease

Entry Detail

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General Information

Database ID: exR0784127 RNA Name: RMRP RNA Type: lncRNA Chromosome: chr9 Starnd: - Coordinate: Start Site(bp): 35657751 End Site(bp): 35658018 External Links: ENSG00000269900

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF3 chr3 184186023 184194012 + ABR chr17 1003518 1229738 - AC005258.1 chr19 2269525 2341172 + AC092143.1 chr16 89919165 89936092 + AC124312.1 chr15 24955034 25000276 + ACACA chr17 37084992 37406836 - ACTN4 chr19 38647649 38731589 + ADAMTS1 chr21 26835755 26845409 - AFMID chr17 78187317 78207701 + AHNAK chr11 62433542 62556235 - AKAP8L chr19 15380050 15419141 - AL035078.4 chr11 31812391 32104665 + AC011005.1 chr7 129126518 129130793 + AC011462.1 chr19 41350853 41425001 + ACTL6A chr3 179562886 179588407 + AHSA1 chr14 77457870 77469472 + AKT3 chr1 243488233 243851079 - AL136295.4 chr14 24180395 24190416 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1-3p chr18 21829015 21829036 - hsa-miR-206 chr6 52144401 52144422 + hsa-miR-580-3p chr5 36147907 36147928 - hsa-miR-613 chr12 12764709 12764728 + hsa-miR-3142 chr5 160474450 160474471 + hsa-miR-1245b-5p chr2 188978133 188978153 - hsa-miR-766-5p chrX 119646799 119646820 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC008050.1 chr14 76495363 76726712 - AC016405.3 chr8 122779971 122780830 - AC016876.2 chr17 7581964 7584086 - AC023509.1 chr12 53441741 53467528 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.