exRNAdisease

Entry Detail

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General Information

Database ID: exR0784149 RNA Name: SNHG15 RNA Type: lncRNA Chromosome: chr7 Starnd: - Coordinate: Start Site(bp): 44983023 End Site(bp): 44986961 External Links: ENSG00000232956

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC093525.2 chr16 2496032 2520218 + ACTG1 chr17 81509971 81523847 - ADAMTS7 chr15 78759206 78811464 - ADH5 chr4 99070978 99088801 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-18a-5p chr13 91350756 91350778 + hsa-miR-141-3p chr12 6964155 6964176 + hsa-miR-153-3p chr2 219294126 219294147 - hsa-miR-188-5p chrX 50003517 50003537 + hsa-miR-200a-3p chr1 1167916 1167937 + hsa-miR-345-5p chr14 100307876 100307897 + hsa-miR-346 chr10 86264747 86264769 - hsa-miR-18b-5p chrX 134170084 134170106 - hsa-miR-451a chr17 28861403 28861424 - hsa-miR-483-3p chr11 2134142 2134162 - hsa-miR-371a-5p chr19 53787680 53787699 + hsa-miR-873-5p chr9 28888925 28888945 - hsa-miR-1323 chr19 53671978 53671999 + hsa-miR-548o-3p chr20 38516607 38516628 + hsa-miR-1252-5p chr12 79419261 79419282 + hsa-miR-4735-3p chr1 196582417 196582437 - hsa-miR-506-5p chrX 147230788 147230809 - hsa-miR-1180-5p chr17 19344548 19344568 - hsa-miR-6866-3p chr17 40161980 40162001 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.