exRNAdisease

Entry Detail

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General Information

Database ID: exR0784152 RNA Name: SNHG20 RNA Type: lncRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 77086716 End Site(bp): 77099902 External Links: ENSG00000234912

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-19a-3p chr13 91350939 91350961 + hsa-miR-19b-3p chr13 91351245 91351267 + hsa-miR-140-5p chr16 69933103 69933124 + hsa-miR-342-3p chr14 100109715 100109737 + hsa-miR-452-5p chrX 151959678 151959699 - hsa-miR-495-3p chr14 101033804 101033825 + hsa-miR-520g-3p chr19 53722220 53722243 + hsa-miR-520h chr19 53742566 53742587 + hsa-miR-513a-5p chrX 147213538 147213555 - hsa-miR-3150b-3p chr8 95072924 95072944 - hsa-miR-4676-3p chr10 72721072 72721093 + hsa-miR-4784 chr2 131491208 131491227 - hsa-miR-2467-3p chr2 239351732 239351753 - hsa-miR-5688 chr3 85385761 85385782 + hsa-miR-892c-3p chrX 145992760 145992781 - hsa-miR-6516-5p chr17 77089428 77089449 + hsa-miR-6516-3p chr17 77089469 77089490 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.