exRNAdisease

Entry Detail

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General Information

Database ID: exR0784153 RNA Name: SNHG22 RNA Type: lncRNA Chromosome: chr18 Starnd: + Coordinate: Start Site(bp): 49814023 End Site(bp): 49851059 External Links: ENSG00000267322

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD12 chr20 25294742 25390835 - ACTB chr7 5527148 5563784 - ADGRG1 chr16 57610652 57665580 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-27a-3p chr19 13836447 13836467 - hsa-miR-200b-3p chr1 1167160 1167181 + hsa-miR-27b-3p chr9 95085505 95085525 + hsa-miR-128-3p chr2 135665446 135665466 + hsa-miR-200c-3p chr12 6963742 6963764 + hsa-miR-324-3p chr17 7223308 7223330 - hsa-miR-429 chr1 1169055 1169076 + hsa-miR-518f-3p chr19 53700067 53700087 + hsa-miR-518b chr19 53702787 53702808 + hsa-miR-518c-3p chr19 53708796 53708818 + hsa-miR-518a-3p chr19 53739385 53739406 + hsa-miR-518d-3p chr19 53734929 53734949 + hsa-miR-874-3p chr5 137647582 137647603 - hsa-miR-1247-5p chr14 101560362 101560383 - hsa-miR-1913 chr6 166509364 166509385 - hsa-miR-3681-3p chr2 12199174 12199195 + hsa-miR-3173-5p chr14 95137961 95137982 - hsa-miR-2467-3p chr2 239351732 239351753 - hsa-miR-216a-3p chr2 55988981 55989002 - hsa-miR-6512-3p chr2 177313811 177313832 - hsa-miR-6720-5p chr6 1390359 1390381 - hsa-miR-6799-3p chr19 49791912 49791934 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.