exRNAdisease

Entry Detail

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General Information

Database ID: exR0784154 RNA Name: SNHG3 RNA Type: lncRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 28505980 End Site(bp): 28510892 External Links: ENSG00000242125

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004922.1 chr7 99325879 99394653 + AC007192.1 chr19 18153158 18178117 + AC011448.1 chr19 19516227 19536076 + AC124312.1 chr15 24955034 25000276 + ACAP1 chr17 7336529 7351477 + ACTG1 chr17 81509971 81523847 - AEN chr15 88621337 88632281 + AGRN chr1 1020120 1056118 + AK6 chr5 69350984 69370013 - AKR1A1 chr1 45550543 45570049 + AL513165.2 chr9 37512547 37592469 - ALDH1B1 chr9 38392702 38398661 + AC024592.3 chr19 5866171 5903787 - AC026954.2 chr17 7312661 7319174 - AC107871.1 chr15 68184032 68229718 - AIMP1 chr4 106315544 106349456 + AL022318.4 chr22 39014363 39033276 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-196a-5p chr17 48632532 48632553 - hsa-miR-186-5p chr1 71067681 71067702 - hsa-miR-326 chr11 75335108 75335127 - hsa-miR-384 chrX 76919285 76919304 - hsa-miR-485-5p chr14 101055427 101055448 + hsa-miR-493-5p chr14 100869075 100869096 + hsa-miR-515-5p chr19 53685022 53685045 + hsa-miR-519e-5p chr19 53679953 53679974 + hsa-miR-330-5p chr19 45639049 45639070 - hsa-miR-2681-3p chr13 101967665 101967686 - hsa-miR-2355-5p chr2 207110043 207110063 - hsa-miR-3614-5p chr17 56891319 56891341 - hsa-miR-3940-3p chr19 6416434 6416455 - hsa-miR-499b-5p chr20 34990443 34990463 - hsa-miR-5094 chr15 89850690 89850711 - hsa-miR-514a-5p chrX 147284690 147284712 - hsa-miR-6509-5p chr7 135207044 135207064 - hsa-miR-6512-3p chr2 177313811 177313832 - hsa-miR-412-5p chr14 101065465 101065487 + hsa-miR-6720-5p chr6 1390359 1390381 - hsa-miR-6884-5p chr17 40026383 40026404 - hsa-miR-5100 chr10 42997630 42997651 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004069.1 chr4 105137280 105140619 - AC011825.3 chr18 32018829 32111779 + AC023509.1 chr12 53441741 53467528 + AC099778.1 chr3 47379089 47380999 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.