exRNAdisease

Entry Detail

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General Information

Database ID: exR0784219 RNA Name: ZFAS1 RNA Type: lncRNA Chromosome: chr20 Starnd: + Coordinate: Start Site(bp): 49278178 End Site(bp): 49299600 External Links: ENSG00000177410

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD14B chr3 51968510 51983409 - AC138811.2 chr16 18788063 18801519 - ACTG1 chr17 81509971 81523847 - AEN chr15 88621337 88632281 + AC107871.1 chr15 68184032 68229718 - AC134669.1 chr17 31305213 31318831 - AGTPBP1 chr9 85546539 85742029 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-96-5p chr7 129774739 129774761 - hsa-miR-7-5p chr19 4770700 4770723 + hsa-miR-150-5p chr19 49500832 49500853 - hsa-miR-193a-3p chr17 31560050 31560071 + hsa-miR-34b-5p chr11 111512950 111512972 + hsa-miR-432-5p chr14 100884496 100884518 + hsa-miR-193b-3p chr16 14304017 14304038 + hsa-miR-520a-5p chr19 53690895 53690915 + hsa-miR-525-5p chr19 53697547 53697567 + hsa-miR-510-5p chrX 147272378 147272399 - hsa-miR-642a-5p chr19 45674943 45674964 + hsa-miR-421 chrX 74218392 74218414 - hsa-miR-582-3p chr5 59703630 59703651 - hsa-miR-654-3p chr14 101040269 101040290 + hsa-miR-1323 chr19 53671978 53671999 + hsa-miR-1271-5p chr5 176367960 176367981 + hsa-miR-548o-3p chr20 38516607 38516628 + hsa-miR-449c-5p chr5 55172313 55172337 - hsa-miR-2682-5p chr1 98045307 98045329 - hsa-miR-3121-3p chr1 180438323 180438344 - hsa-miR-3924 chr10 57304489 57304510 - hsa-miR-3942-5p chr15 35372321 35372342 - hsa-miR-4640-3p chr6 30890949 30890970 + hsa-miR-4703-5p chr13 51552599 51552621 + hsa-miR-5047 chr17 64501230 64501250 - hsa-miR-6835-3p chr6 34240714 34240736 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC139149.1 chr17 81514047 81527776 + AC147651.4 chr7 603185 608482 + AC245014.3 chr1 145281116 145281462 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.