exRNAdisease

Entry Detail

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General Information

Database ID: exR0788401 RNA Name: DPYSL3 RNA Type: mRNA Chromosome: chr5 Starnd: - Coordinate: Start Site(bp): 147390808 End Site(bp): 147510068 External Links: ENSG00000113657

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC10 chr6 43427366 43450427 + ABRACL chr6 139028745 139043302 + AC006030.1 chr2 74211604 74363377 - AC091167.2 chr15 90249556 90272208 + AC092647.5 chr7 55887277 55955239 + ACACA chr17 37084992 37406836 - ACTG1 chr17 81509971 81523847 - ACTN1 chr14 68874143 68979440 - ACTR3 chr2 113890063 113962596 + ACVR1C chr2 157526767 157628864 - ADGRL1 chr19 14147743 14206187 - AEBP2 chr12 19404045 19720801 + AFDN chr6 167826922 167972023 + AGPAT1 chr6 32168212 32178096 - AHCY chr20 34280268 34311802 - AKT1 chr14 104769349 104795751 - ALDH18A1 chr10 95605941 95656711 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC021242.3 chr8 9555144 9556520 - AC027031.2 chr8 106270144 106272902 + AC079781.5 chr7 97851688 97972985 - AC106864.1 chr4 112693047 112706810 - AC108449.2 chr8 29055935 29056685 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.