exRNAdisease

Entry Detail

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General Information

Database ID: exR0788671 RNA Name: EIF4B RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 53006158 End Site(bp): 53042209 External Links: ENSG00000063046

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABLIM1 chr10 114431113 114768061 - AC008763.3 chr19 7678501 7682854 + AC010422.3 chr19 12643831 12648397 - AC011462.1 chr19 41350853 41425001 + AC058822.1 chr4 53377839 54295272 + AC073508.2 chr17 40627356 40665141 - AC093525.1 chr16 2513965 2527955 + AC124312.1 chr15 24955034 25000276 + AC245033.1 chr15 82536788 82573194 - ACADVL chr17 7217125 7225266 + ACOT8 chr20 45841721 45857405 - ACSF2 chr17 50426158 50474845 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACVR1 chr2 157736444 157876330 - ADAL chr15 43330657 43354555 + ADAR chr1 154582057 154628013 - ADIPOR2 chr12 1688574 1788674 + ADORA2A chr22 24417879 24442357 + AEN chr15 88621337 88632281 + AGBL5 chr2 27042364 27070622 + AHCY chr20 34280268 34311802 - AIG1 chr6 143060496 143341058 + AIMP1 chr4 106315544 106349456 + AKNA chr9 114334156 114394405 - AL121594.1 chr14 35122549 35317474 + AL139011.2 chr1 160216800 160285130 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3680-5p chr16 21506101 21506122 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC018647.2 chr7 35695214 35699413 + AC023509.1 chr12 53441741 53467528 + AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + AL118506.1 chr20 63861212 63864293 - AL121832.3 chr20 62402236 62405935 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.