exRNAdisease

Entry Detail

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General Information

Database ID: exR0788681 RNA Name: EIF4G2 RNA Type: mRNA Chromosome: chr11 Starnd: - Coordinate: Start Site(bp): 10797050 End Site(bp): 10808940 External Links: ENSG00000110321

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASDHPPT chr11 106075501 106098699 + ABCC1 chr16 15949577 16143074 + ABHD17B chr9 71862452 71910931 - ABHD8 chr19 17292131 17310236 - ABI1 chr10 26746593 26861087 - ABR chr17 1003518 1229738 - AC004922.1 chr7 99325879 99394653 + AC005020.2 chr7 99558695 99607810 + AC005324.4 chr17 15699692 15744778 + AC018512.1 chr15 43772617 43799133 - AC073896.1 chr12 56285916 56316059 - AC120057.2 chr17 7240427 7244635 - ACP1 chr2 264140 278283 + ACTG1 chr17 81509971 81523847 - ADSL chr22 40346500 40390463 + AFDN chr6 167826922 167972023 + AGPAT4 chr6 161129967 161274061 - AKAP12 chr6 151239967 151358559 + AKIRIN1 chr1 38991276 39006059 + AL022238.4 chr22 40346529 40410054 + AL590132.1 chr1 210858125 211134146 - ALAD chr9 113386312 113401290 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-92a-3p chrX 134169544 134169565 - hsa-miR-4485-3p chr11 10508277 10508296 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004812.2 chr12 120116907 120119000 + AC025279.1 chr16 29291220 29372110 + AC087190.3 chr16 9104848 9113181 + AC126365.1 chr17 20788071 20789584 + AD000090.1 chr19 35557956 35581954 + AL132780.1 chr14 22929607 22956374 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.