exRNAdisease

Entry Detail

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General Information

Database ID: exR0788683 RNA Name: EIF4H RNA Type: mRNA Chromosome: chr7 Starnd: + Coordinate: Start Site(bp): 74174245 End Site(bp): 74197101 External Links: ENSG00000106682

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCD4 chr14 74285269 74303055 - ABCF2 chr7 151207837 151227166 - AC010422.3 chr19 12643831 12648397 - AC023055.1 chr12 55757275 55827546 - AC046185.1 chr17 63702845 63752097 - AC092647.5 chr7 55887277 55955239 + AC139530.2 chr17 81703371 81720539 + AC244197.3 chrX 149477104 149540926 - ACBD6 chr1 180269653 180502954 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTN1 chr14 68874143 68979440 - ACTN4 chr19 38647649 38731589 + ADAMTSL4 chr1 150549369 150560937 + ADD3 chr10 109996368 110135565 + ADGRG2 chrX 18989307 19122637 - ADIPOR1 chr1 202940826 202958572 - ADRM1 chr20 62302093 62308862 + AHI1 chr6 135283532 135497765 - AHSA1 chr14 77457870 77469472 + AKIRIN1 chr1 38991276 39006059 + AL031708.1 chr16 1632259 1686715 + AL109827.1 chr20 35632340 35674544 - AL713999.1 chr1 155169409 155187272 - ALDH7A1 chr5 126531200 126595362 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4444 chr2 177212768 177212785 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005618.1 chr5 141326210 141329357 + AC007218.1 chr16 9666885 9676843 - AC007878.1 chr2 71373938 71376320 + AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - AC023509.1 chr12 53441741 53467528 + AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.