exRNAdisease

Entry Detail

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General Information

Database ID: exR0789707 RNA Name: GABARAP RNA Type: mRNA Chromosome: chr17 Starnd: - Coordinate: Start Site(bp): 7240008 End Site(bp): 7242449 External Links: ENSG00000170296

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007906.2 chr16 53035690 53052873 - AC015813.2 chr17 57989038 58007246 - AC027796.3 chr17 3585149 3636249 - AC040162.1 chr16 67929614 67936017 - AC120057.2 chr17 7240427 7244635 - AC138811.2 chr16 18788063 18801519 - ACAA2 chr18 49782164 49813953 - ACPP chr3 132317369 132368298 + ACSL5 chr10 112374018 112428380 + ACTB chr7 5527148 5563784 - ACTR1A chr10 102461881 102502712 - ACTR2 chr2 65227753 65271253 + ADORA2A chr22 24417879 24442357 + ADRM1 chr20 62302093 62308862 + AHCY chr20 34280268 34311802 - AKAP17A chrX 1591604 1602520 + AKAP8L chr19 15380050 15419141 - AL136295.1 chr14 24189157 24213473 - ALDH18A1 chr10 95605941 95656711 - ALDH7A1 chr5 126531200 126595362 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC132217.1 chr11 2129121 2129964 - AL096870.2 chr14 24209646 24215987 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.