exRNAdisease

Entry Detail

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General Information

Database ID: exR0790507 RNA Name: HCFC1 RNA Type: mRNA Chromosome: chrX Starnd: - Coordinate: Start Site(bp): 153947557 End Site(bp): 153971818 External Links: ENSG00000172534

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + ABCC1 chr16 15949577 16143074 + AC005258.1 chr19 2269525 2341172 + AC008763.2 chr19 7629796 7643048 + AC099811.2 chr17 42119674 42154916 - ACO2 chr22 41469117 41528989 + ACTN1 chr14 68874143 68979440 - ACVR1B chr12 51951699 51997078 + ADAM11 chr17 44758988 44781846 + ADAMTS1 chr21 26835755 26845409 - ADCY3 chr2 24819169 24919839 - AL136295.1 chr14 24189157 24213473 - ALDH18A1 chr10 95605941 95656711 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-515-5p chr19 53685022 53685045 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002116.1 chr19 36008638 36014235 - AC002470.2 chr22 20979462 20998121 + AC007952.4 chr17 19112000 19112636 - AC060780.1 chr17 43148368 43171037 - AC068205.2 chr11 43578889 43840030 + AC093525.7 chr16 2561471 2565096 - AC109460.3 chr16 28974804 28990775 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.