exRNAdisease

Entry Detail

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General Information

Database ID: exR0790648 RNA Name: HLA-DPB1 RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 33075990 End Site(bp): 33089696 External Links: ENSG00000223865

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF1 chr6 30571393 30597179 + ABHD14B chr3 51968510 51983409 - AC004832.3 chr22 30409255 30428990 + AC004922.1 chr7 99325879 99394653 + AC007192.1 chr19 18153158 18178117 + AC008878.3 chr19 7382834 7470241 + AC011462.1 chr19 41350853 41425001 + AC020909.1 chr19 50415799 50428409 + AC120057.2 chr17 7240427 7244635 - ACACA chr17 37084992 37406836 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - AEN chr15 88621337 88632281 + AFMID chr17 78187317 78207701 + AHCYL1 chr1 109984765 110023742 + AKR1A1 chr1 45550543 45570049 + AL136454.1 chr1 192716132 192716653 + AL669918.1 chr6 32813767 32838822 - AL928654.3 chr14 105487199 105492267 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010327.5 chr19 55216660 55221616 + AC016730.1 chr2 13723048 13758152 + AC026471.1 chr16 31456711 31459736 - AC051619.7 chr15 45200325 45200632 - AC139149.1 chr17 81514047 81527776 + AC245014.3 chr1 145281116 145281462 + AL137782.1 chr13 75549773 75807120 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.