exRNAdisease

Entry Detail

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General Information

Database ID: exR0790699 RNA Name: HNRNPA1 RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 54280193 End Site(bp): 54287088 External Links: ENSG00000135486

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAGAB chr15 67200667 67255195 - AAMP chr2 218264123 218270257 - ABHD4 chr14 22598237 22613215 + ABL1 chr9 130713016 130887675 + AC004832.3 chr22 30409255 30428990 + AC006064.6 chr12 6556886 6607367 - AC010422.3 chr19 12643831 12648397 - AC073082.1 chr2 48632291 48755724 - AC120057.2 chr17 7240427 7244635 - AC138894.1 chr16 28456371 28492098 - ACKR3 chr2 236567787 236582354 + ACOT8 chr20 45841721 45857405 - ACTB chr7 5527148 5563784 - ACTR5 chr20 38748460 38772520 + ADRM1 chr20 62302093 62308862 + AGBL5 chr2 27042364 27070622 + AHSA1 chr14 77457870 77469472 + AKAP17A chrX 1591604 1602520 + ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004069.1 chr4 105137280 105140619 - AC008969.1 chr19 58002061 58011232 + AC009055.2 chr16 65190973 65234914 - AC087190.3 chr16 9104848 9113181 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AGAP11 chr10 86970741 87010126 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.