exRNAdisease

Entry Detail

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General Information

Database ID: exR0790709 RNA Name: HNRNPD RNA Type: mRNA Chromosome: chr4 Starnd: - Coordinate: Start Site(bp): 82352498 End Site(bp): 82374503 External Links: ENSG00000138668

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF1 chr6 30571393 30597179 + ABHD14B chr3 51968510 51983409 - ABHD8 chr19 17292131 17310236 - ABL1 chr9 130713016 130887675 + AC010422.3 chr19 12643831 12648397 - AC092073.1 chr19 34396315 34409364 + AC092143.1 chr16 89919165 89936092 + AC139530.2 chr17 81703371 81720539 + AC245033.1 chr15 82536788 82573194 - ACD chr16 67657512 67660815 - ACLY chr17 41866917 41930542 - ACOT7 chr1 6264269 6394391 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAP1 chr7 897900 955407 - AGPAT5 chr8 6708642 6761503 + AHCY chr20 34280268 34311802 - AKAP13 chr15 85380571 85749358 + AKR7A2 chr1 19303965 19312146 - AL035078.4 chr11 31812391 32104665 + AL928654.3 chr14 105487199 105492267 + ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002094.1 chr17 28357647 28381697 + AC018521.1 chr17 47945424 47981736 + AC021078.1 chr5 149494314 149504670 - AC104257.1 chr8 131308545 131317632 + AC132217.1 chr11 2129121 2129964 - AC245014.3 chr1 145281116 145281462 + AC245033.4 chr15 82533175 82540008 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.