exRNAdisease

Entry Detail

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General Information

Database ID: exR0790711 RNA Name: HNRNPF RNA Type: mRNA Chromosome: chr10 Starnd: - Coordinate: Start Site(bp): 43385617 End Site(bp): 43409166 External Links: ENSG00000169813

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AARSD1 chr17 42950526 42964498 - ABCF2 chr7 151207837 151227166 - AC007192.1 chr19 18153158 18178117 + AC138811.2 chr16 18788063 18801519 - ACTG1 chr17 81509971 81523847 - ACTN1 chr14 68874143 68979440 - ADD3 chr10 109996368 110135565 + ADNP2 chr18 80109262 80147523 + ADSL chr22 40346500 40390463 + AGO4 chr1 35808016 35857890 + AGPAT5 chr8 6708642 6761503 + AHCY chr20 34280268 34311802 - AKAP12 chr6 151239967 151358559 + AL022238.4 chr22 40346529 40410054 + AL136295.1 chr14 24189157 24213473 - AL136295.4 chr14 24180395 24190416 - ALDH3A2 chr17 19648136 19685760 + ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002470.2 chr22 20979462 20998121 + AC016026.1 chr22 17787652 17811497 - AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.