exRNAdisease

Entry Detail

---



General Information

Database ID: exR0791324 RNA Name: ITM2C RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 230864639 End Site(bp): 230879248 External Links: ENSG00000135916

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD8 chr19 17292131 17310236 - AC010422.3 chr19 12643831 12648397 - AC013394.1 chr15 92883413 92949230 + AC092143.1 chr16 89919165 89936092 + AC124312.1 chr15 24955034 25000276 + AC135050.2 chr16 31083439 31094956 - ACP1 chr2 264140 278283 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAM17 chr2 9488486 9556732 - ADNP2 chr18 80109262 80147523 + ADSL chr22 40346500 40390463 + AEN chr15 88621337 88632281 + AGPAT2 chr9 136673143 136687457 - AICDA chr12 8602170 8612867 - AK2 chr1 33007940 33080996 - AKAP13 chr15 85380571 85749358 + AL022238.4 chr22 40346529 40410054 + AL713999.1 chr1 155169409 155187272 - ALDH16A1 chr19 49453225 49471050 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4442 chr3 25664875 25664891 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - AC106864.1 chr4 112693047 112706810 - AL022311.1 chr22 37876148 37895563 + AL031282.2 chr1 1702736 1737688 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.