exRNAdisease

Entry Detail

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General Information

Database ID: exR0791745 RNA Name: KMT2D RNA Type: mRNA Chromosome: chr12 Starnd: - Coordinate: Start Site(bp): 49018975 End Site(bp): 49059774 External Links: ENSG00000167548

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD17A chr19 1876810 1885547 - ABHD2 chr15 89087459 89202355 + ABL1 chr9 130713016 130887675 + ABL2 chr1 179099330 179229684 - AC009133.6 chr16 29812261 29820092 + ACACA chr17 37084992 37406836 - ACIN1 chr14 23058564 23095614 - ADARB1 chr21 45073853 45226560 + ADCY6 chr12 48766194 48789037 - AEN chr15 88621337 88632281 + AGPAT1 chr6 32168212 32178096 - AGPAT3 chr21 43865223 43987592 + AKT2 chr19 40230317 40285536 - AL121845.3 chr20 63708864 63739103 + AL139300.1 chr14 103562962 103685924 + ALDH3A2 chr17 19648136 19685760 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-7-5p chr19 4770700 4770723 + hsa-miR-34a-5p chr1 9151735 9151756 - hsa-miR-214-3p chr1 172138816 172138837 - hsa-miR-185-5p chr22 20033153 20033174 + hsa-miR-449a chr5 55170586 55170607 - hsa-miR-497-5p chr17 7017979 7017999 - hsa-miR-508-3p chrX 147236945 147236967 - hsa-miR-654-5p chr14 101040234 101040255 + hsa-miR-296-3p chr20 58817626 58817647 - hsa-miR-423-5p chr17 30117095 30117117 + hsa-miR-541-3p chr14 101064548 101064569 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002310.2 chr16 30572039 30583860 + AC007383.2 chr2 206084605 206086564 + AD000090.1 chr19 35557956 35581954 + AL022157.1 chrX 57121662 57127243 + AL121832.3 chr20 62402236 62405935 - AL133523.1 chr14 100207407 100238555 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.