exRNAdisease

Entry Detail

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General Information

Database ID: exR0793202 RNA Name: MT-ND1 RNA Type: mRNA Chromosome: chrMT Starnd: + Coordinate: Start Site(bp): 3307 End Site(bp): 4262 External Links: ENSG00000198888

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD12 chr20 25294742 25390835 - ABLIM1 chr10 114431113 114768061 - AC008575.1 chr5 112827213 112867582 + AC048338.1 chr12 122207779 122266423 - AC068946.2 chr2 219209772 219222738 - AC092718.3 chr16 81053587 81096296 - AC092718.8 chr16 81022316 81096284 - ACAD10 chr12 111686056 111757107 + ACTL6A chr3 179562886 179588407 + ACTR1A chr10 102461881 102502712 - ADAM11 chr17 44758988 44781846 + ADGRV1 chr5 90529344 91164437 + ADORA2A chr22 24417879 24442357 + AGPAT1 chr6 32168212 32178096 - AHCY chr20 34280268 34311802 - AL133352.1 chr10 100505628 100529881 - AL355987.3 chr9 136791379 136800595 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002550.2 chr16 19694035 19694428 - AC007952.4 chr17 19112000 19112636 - AC008969.1 chr19 58002061 58011232 + AC016876.2 chr17 7581964 7584086 - AC023509.1 chr12 53441741 53467528 + AC027307.2 chr19 1457670 1458580 - AC090152.1 chr8 59119040 59123478 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL035425.4 chrX 108719949 108724944 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.