exRNAdisease

Entry Detail

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General Information

Database ID: exR0793203 RNA Name: MT-ND2 RNA Type: mRNA Chromosome: chrMT Starnd: + Coordinate: Start Site(bp): 4470 End Site(bp): 5511 External Links: ENSG00000198763

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAMP chr2 218264123 218270257 - AARS2 chr6 44298731 44313347 - AATF chr17 36948954 37056871 + AC002996.1 chr12 111753890 111791418 + AC005943.1 chr19 1578339 1605445 - AC008695.1 chr5 131425891 131796983 - AC008878.3 chr19 7382834 7470241 + AC026464.4 chr16 69299682 69322700 + AC099811.2 chr17 42119674 42154916 - ACAD9 chr3 128879596 128916067 + ACTG1 chr17 81509971 81523847 - ACTR2 chr2 65227753 65271253 + ADAMTS3 chr4 72280969 72569221 - ADD1 chr4 2843857 2930076 + ADNP2 chr18 80109262 80147523 + AFAP1 chr4 7758714 7939926 - AHCY chr20 34280268 34311802 - AHI1 chr6 135283532 135497765 - AIF1L chr9 131096476 131123152 + AKR1A1 chr1 45550543 45570049 + AL138752.2 chr9 37588413 38068687 - ALDH18A1 chr10 95605941 95656711 - ALDH2 chr12 111766887 111817532 + ALDH7A1 chr5 126531200 126595362 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004812.2 chr12 120116907 120119000 + AC005726.2 chr17 28633206 28635950 + AC007952.4 chr17 19112000 19112636 - AC009446.1 chr8 71675300 71702786 + AC009902.2 chr8 81279871 81281446 - AC021078.1 chr5 149494314 149504670 - AC097478.1 chr4 89743792 89744305 + AC124045.1 chr3 44667412 44669364 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.