exRNAdisease

Entry Detail

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General Information

Database ID: exR0793205 RNA Name: MT-ND4 RNA Type: mRNA Chromosome: chrMT Starnd: + Coordinate: Start Site(bp): 10760 End Site(bp): 12137 External Links: ENSG00000198886

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ALDH18A1 chr10 95605941 95656711 - ADNP chr20 50888916 50931437 - ADGRL1 chr19 14147743 14206187 - AC040162.1 chr16 67929614 67936017 - AKAP1 chr17 57085092 57121346 + ACADVL chr17 7217125 7225266 + AL365205.1 chr6 41780349 41790141 + AC073896.1 chr12 56285916 56316059 - AC008403.1 chr19 48465837 48472431 + ACTG1 chr17 81509971 81523847 - AC011448.1 chr19 19516227 19536076 + AHCY chr20 34280268 34311802 - ADIPOR2 chr12 1688574 1788674 + AC091167.2 chr15 90249556 90272208 + AKAP12 chr6 151239967 151358559 + ADH5 chr4 99070978 99088801 - AHCYL1 chr1 109984765 110023742 + ACTR2 chr2 65227753 65271253 + AC139530.2 chr17 81703371 81720539 + AKAP10 chr17 19904302 19978343 - ACTB chr7 5527148 5563784 - ACTR1A chr10 102461881 102502712 - AAMP chr2 218264123 218270257 - ADCY1 chr7 45574140 45723116 + ALDH1B1 chr9 38392702 38398661 + AL139300.1 chr14 103562962 103685924 + ACTL6A chr3 179562886 179588407 + ABRACL chr6 139028745 139043302 + AEN chr15 88621337 88632281 + ABHD13 chr13 108218392 108234243 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-6728-3p chr1 8866502 8866522 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand A1BG-AS1 chr19 58347718 58355455 + AC002470.2 chr22 20979462 20998121 + AC006504.5 chr19 27793431 27984984 + AC007952.4 chr17 19112000 19112636 - AC008124.1 chr12 45718046 45727775 - AC016876.2 chr17 7581964 7584086 - AC099329.1 chr3 42785087 42852428 - AC108010.1 chr7 128574751 128626473 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.