exRNAdisease

Entry Detail

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General Information

Database ID: exR0794085 RNA Name: NUP62 RNA Type: mRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 49906825 End Site(bp): 49929763 External Links: ENSG00000213024

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABRACL chr6 139028745 139043302 + AC007192.1 chr19 18153158 18178117 + AC010422.3 chr19 12643831 12648397 - AC011462.1 chr19 41350853 41425001 + AC068946.2 chr2 219209772 219222738 - AC138696.1 chr8 143247110 143276403 + ACAA2 chr18 49782164 49813953 - ACACA chr17 37084992 37406836 - ACADVL chr17 7217125 7225266 + ACAP3 chr1 1292390 1309609 - ACIN1 chr14 23058564 23095614 - ACSF3 chr16 89088375 89164121 + ACTB chr7 5527148 5563784 - ADGRE5 chr19 14380501 14408725 + ADGRL1 chr19 14147743 14206187 - AFF2 chrX 148500617 149000663 + AGAP3 chr7 151085831 151144436 + AGO3 chr1 35930718 36072500 + AKAP8L chr19 15380050 15419141 - AKT2 chr19 40230317 40285536 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002470.2 chr22 20979462 20998121 + AC004812.2 chr12 120116907 120119000 + AC073957.2 chr7 1055360 1059261 - AC091271.1 chr17 59618553 59619714 - AF131216.3 chr8 11345748 11347502 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.