exRNAdisease

Entry Detail

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General Information

Database ID: exR0794993 RNA Name: PEBP1 RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 118136124 End Site(bp): 118145584 External Links: ENSG00000089220

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABRACL chr6 139028745 139043302 + AC005258.1 chr19 2269525 2341172 + AC008982.1 chr19 38817471 38840178 - AC010422.3 chr19 12643831 12648397 - AC091167.2 chr15 90249556 90272208 + AC092143.1 chr16 89919165 89936092 + AC139530.2 chr17 81703371 81720539 + AC245033.1 chr15 82536788 82573194 - ACAD9 chr3 128879596 128916067 + ACTB chr7 5527148 5563784 - ADAM10 chr15 58588809 58749791 - ADGRG2 chrX 18989307 19122637 - ADNP2 chr18 80109262 80147523 + ADSL chr22 40346500 40390463 + AEN chr15 88621337 88632281 + AKAP8L chr19 15380050 15419141 - AKR1B1 chr7 134442356 134459284 - AL133352.1 chr10 100505628 100529881 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-302d-3p chr4 112648006 112648028 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC023509.1 chr12 53441741 53467528 + AC040162.3 chr16 67882461 67886367 + AC068473.5 chr18 79677287 79679358 - AC091564.7 chr11 6610883 6616594 - AC132217.1 chr11 2129121 2129964 - AC245033.4 chr15 82533175 82540008 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.