exRNAdisease

Entry Detail

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General Information

Database ID: exR0795051 RNA Name: PGAM1 RNA Type: mRNA Chromosome: chr10 Starnd: + Coordinate: Start Site(bp): 97426191 End Site(bp): 97433444 External Links: ENSG00000171314

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASDHPPT chr11 106075501 106098699 + ABCB6 chr2 219209772 219218994 - ABHD17C chr15 80679684 80755621 + ABI2 chr2 203328239 203447728 + ABL2 chr1 179099330 179229684 - AC007846.2 chr17 5772926 6080792 + AC073082.1 chr2 48632291 48755724 - AC091959.3 chr5 146203550 146339251 + AC110275.1 chr8 43018424 43077334 + AC139530.2 chr17 81703371 81720539 + AC245033.1 chr15 82536788 82573194 - ACACA chr17 37084992 37406836 - ACAT2 chr6 159762045 159779112 + ACBD7 chr10 15075475 15088776 - ACTB chr7 5527148 5563784 - ACTR1A chr10 102461881 102502712 - ACTR1B chr2 97655939 97664044 - ADA chr20 44619522 44652233 - ADAR chr1 154582057 154628013 - ADD2 chr2 70607618 70768225 - AFAP1 chr4 7758714 7939926 - AGBL5 chr2 27042364 27070622 + AKT2 chr19 40230317 40285536 - AL024498.2 chr6 10747794 10930423 + AL157392.5 chr10 13610047 13655929 + ALDH18A1 chr10 95605941 95656711 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-423-5p chr17 30117095 30117117 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009022.1 chr16 69976297 70065948 - AC026461.1 chr16 56682470 56687807 + AC245033.4 chr15 82533175 82540008 - AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.