exRNAdisease

Entry Detail

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General Information

Database ID: exR0795534 RNA Name: POU5F1 RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 31164337 End Site(bp): 31180731 External Links: ENSG00000204531

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCD4 chr14 74285269 74303055 - ABCE1 chr4 145098288 145129524 + ABHD14A-ACY1 chr3 51974706 51989183 + ABL1 chr9 130713016 130887675 + AC008764.1 chr19 16479067 16628204 - AC008982.1 chr19 38817471 38840178 - AC018512.1 chr15 43772617 43799133 - AC023055.1 chr12 55757275 55827546 - AC068946.2 chr2 219209772 219222738 - AC073508.2 chr17 40627356 40665141 - AC124312.1 chr15 24955034 25000276 + AC245033.1 chr15 82536788 82573194 - ACO2 chr22 41469117 41528989 + ACOX1 chr17 75941507 75979177 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + ACTR3B chr7 152759749 152855378 + ACY1 chr3 51983340 51989197 + ADAMTS7 chr15 78759206 78811464 - ADAR chr1 154582057 154628013 - AEN chr15 88621337 88632281 + AFDN chr6 167826922 167972023 + AHCY chr20 34280268 34311802 - AIMP2 chr7 6009255 6023834 + AJUBA chr14 22971177 22982551 - AKT1 chr14 104769349 104795751 - AL121758.1 chr20 646626 675800 - ALAD chr9 113386312 113401290 - ALDH1B1 chr9 38392702 38398661 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004846.1 chr14 73242651 73245979 - AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - AC126365.1 chr17 20788071 20789584 + AC132217.1 chr11 2129121 2129964 - AC245033.4 chr15 82533175 82540008 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.