exRNAdisease

Entry Detail

---



General Information

Database ID: exR0795942 RNA Name: PSMB5 RNA Type: mRNA Chromosome: chr14 Starnd: - Coordinate: Start Site(bp): 23016543 End Site(bp): 23035230 External Links: ENSG00000100804

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASS chr7 122073549 122144255 - AC007192.1 chr19 18153158 18178117 + AC008764.4 chr19 16577642 16660115 - AC010422.3 chr19 12643831 12648397 - AC040162.1 chr16 67929614 67936017 - ACAT1 chr11 108116695 108147603 + ACIN1 chr14 23058564 23095614 - ACTG1 chr17 81509971 81523847 - ADAR chr1 154582057 154628013 - ADD1 chr4 2843857 2930076 + AGBL5 chr2 27042364 27070622 + AIF1L chr9 131096476 131123152 + AKAP5 chr14 64465499 64474503 + AL109827.1 chr20 35632340 35674544 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC068768.1 chr12 123262060 123262402 + AC091820.1 chr5 167296234 167303372 - AC112907.3 chr3 186781780 186784179 - AL132780.1 chr14 22929607 22956374 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.