exRNAdisease

Entry Detail

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General Information

Database ID: exR0795982 RNA Name: PTBP1 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 797075 End Site(bp): 812327 External Links: ENSG00000011304

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + ABCF1 chr6 30571393 30597179 + ABLIM1 chr10 114431113 114768061 - AC005943.1 chr19 1578339 1605445 - AC010132.3 chr7 42909273 42932174 - AC010422.3 chr19 12643831 12648397 - AC073508.2 chr17 40627356 40665141 - AC135050.2 chr16 31083439 31094956 - AC138811.2 chr16 18788063 18801519 - ACBD3 chr1 226144679 226186741 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAMTS8 chr11 130404923 130428609 - ADNP2 chr18 80109262 80147523 + AHCY chr20 34280268 34311802 - AHCYL1 chr1 109984765 110023742 + AHDC1 chr1 27534035 27604431 - AHR chr7 16916359 17346152 + AL136454.1 chr1 192716132 192716653 + AL136531.2 chr20 1317571 1393096 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-147a chr9 120244985 120245004 - hsa-miR-206 chr6 52144401 52144422 + hsa-miR-4523 chr17 29390668 29390688 + hsa-miR-4745-3p chr19 804977 804999 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC020928.2 chr19 36773712 36775908 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.