exRNAdisease

Entry Detail

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General Information

Database ID: exR0796027 RNA Name: PTOV1 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 49850735 End Site(bp): 49860744 External Links: ENSG00000104960

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AARS2 chr6 44298731 44313347 - ABHD12 chr20 25294742 25390835 - AC025165.3 chr12 57772660 57797554 + ACAA1 chr3 38103129 38137242 - ACLY chr17 41866917 41930542 - ACP1 chr2 264140 278283 + ADAMTS13 chr9 133414358 133459402 + ADI1 chr2 3497366 3519531 - ADNP2 chr18 80109262 80147523 + AFDN chr6 167826922 167972023 + AGL chr1 99850361 99924023 + AIMP1 chr4 106315544 106349456 + AKAP17A chrX 1591604 1602520 + AKT2 chr19 40230317 40285536 - AL031708.1 chr16 1632259 1686715 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4749-3p chr19 49854632 49854651 + hsa-miR-6800-5p chr19 49832022 49832042 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC026471.1 chr16 31456711 31459736 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.