exRNAdisease

Entry Detail

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General Information

Database ID: exR0796327 RNA Name: RBBP4 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 32651142 End Site(bp): 32686211 External Links: ENSG00000162521

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC1 chr16 15949577 16143074 + ABTB2 chr11 34150987 34358010 - AC004832.3 chr22 30409255 30428990 + AC005943.1 chr19 1578339 1605445 - AC073508.2 chr17 40627356 40665141 - AC098484.3 chr1 42767292 42794493 + AHCYL1 chr1 109984765 110023742 + AKAP1 chr17 57085092 57121346 + AKR1A1 chr1 45550543 45570049 + AL590132.1 chr1 210858125 211134146 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC105429.1 chr16 87470370 87474370 - AC245014.3 chr1 145281116 145281462 + AL022311.1 chr22 37876148 37895563 + AL133342.1 chr20 48821688 48849458 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.