exRNAdisease

Entry Detail

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General Information

Database ID: exR0796408 RNA Name: RCC1 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 28505943 End Site(bp): 28539300 External Links: ENSG00000180198

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005943.1 chr19 1578339 1605445 - AC011448.1 chr19 19516227 19536076 + AC024592.3 chr19 5866171 5903787 - AC073508.2 chr17 40627356 40665141 - AC124312.1 chr15 24955034 25000276 + AC245033.1 chr15 82536788 82573194 - ACAD9 chr3 128879596 128916067 + ACAP1 chr17 7336529 7351477 + AIMP1 chr4 106315544 106349456 + AKR1A1 chr1 45550543 45570049 + AL121758.1 chr20 646626 675800 - AL136454.1 chr1 192716132 192716653 + AL713999.1 chr1 155169409 155187272 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-148b-3p chr12 54337278 54337299 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC011825.3 chr18 32018829 32111779 + AC015912.3 chr17 56914186 56914533 + AC023509.1 chr12 53441741 53467528 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.