exRNAdisease

Entry Detail

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General Information

Database ID: exR0796811 RNA Name: RPL27A RNA Type: mRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 8682788 End Site(bp): 8714759 External Links: ENSG00000166441

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC245033.1 chr15 82536788 82573194 - ABHD6 chr3 58237532 58295693 + ADGRE5 chr19 14380501 14408725 + ABCG2 chr4 88090150 88231628 - AL136454.1 chr1 192716132 192716653 + ABHD10 chr3 111979010 111993368 + ACTR3B chr7 152759749 152855378 + ACTN3 chr11 66546395 66563334 + ADCK2 chr7 140672945 140696261 + AGPAT3 chr21 43865223 43987592 + ALDOA chr16 30064164 30070457 + AKR1A1 chr1 45550543 45570049 + AHSA1 chr14 77457870 77469472 + AGGF1 chr5 77029251 77065234 + ACOT7 chr1 6264269 6394391 - AC068580.4 chr11 1734821 1763954 - AGBL2 chr11 47659591 47715389 - ADSL chr22 40346500 40390463 + AKR1B1 chr7 134442356 134459284 - AC007192.1 chr19 18153158 18178117 + AL022238.4 chr22 40346529 40410054 + ADGRL2 chr1 81306160 81992436 + ABCC4 chr13 95019835 95301475 - ACD chr16 67657512 67660815 - AIMP1 chr4 106315544 106349456 + AGPS chr2 177392757 177559299 + AC022826.2 chr8 73688691 73878854 - AC124312.1 chr15 24955034 25000276 + ACIN1 chr14 23058564 23095614 - AGA chr4 177430774 177442437 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3064-5p chr17 64500817 64500837 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC016876.2 chr17 7581964 7584086 - AC020978.5 chr16 68225969 68229145 - AC023509.1 chr12 53441741 53467528 + AC068768.1 chr12 123262060 123262402 + AC074183.1 chr7 84939349 84940245 - AC090114.2 chr7 128524016 128531069 - AC090825.1 chr15 99805793 99916818 + AC106864.1 chr4 112693047 112706810 - AC132217.1 chr11 2129121 2129964 - AC245014.3 chr1 145281116 145281462 + AC245033.4 chr15 82533175 82540008 - AL021707.2 chr22 38667585 38681847 - AL022311.1 chr22 37876148 37895563 + AL031595.3 chr22 44139365 44153626 + AL035458.2 chr20 34234840 34281173 - AL050341.2 chr1 40256427 40257967 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.