exRNAdisease

Entry Detail

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General Information

Database ID: exR0796819 RNA Name: RPL35 RNA Type: mRNA Chromosome: chr9 Starnd: - Coordinate: Start Site(bp): 124857880 End Site(bp): 124861981 External Links: ENSG00000136942

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAR2 chr20 36236459 36270918 + AC002985.1 chr19 18907013 18934397 - AC005258.1 chr19 2269525 2341172 + AC010323.1 chr19 8308283 8321379 - AC010422.3 chr19 12643831 12648397 - AC040162.1 chr16 67929614 67936017 - AC093525.1 chr16 2513965 2527955 + AC099811.2 chr17 42119674 42154916 - AC105052.1 chr7 102582523 102642869 - AC120057.2 chr17 7240427 7244635 - ACACA chr17 37084992 37406836 - ACCS chr11 44065925 44084237 + ACIN1 chr14 23058564 23095614 - ACLY chr17 41866917 41930542 - ACOT7 chr1 6264269 6394391 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADCK2 chr7 140672945 140696261 + ADD1 chr4 2843857 2930076 + ADPGK chr15 72751369 72785846 - ADSL chr22 40346500 40390463 + AFG3L2 chr18 12328944 12377227 - AGBL5 chr2 27042364 27070622 + AHCY chr20 34280268 34311802 - AL022238.4 chr22 40346529 40410054 + AL136531.2 chr20 1317571 1393096 - AL928654.3 chr14 105487199 105492267 + ALDH7A1 chr5 126531200 126595362 - ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC026362.1 chr12 122975320 122982907 + AC068473.5 chr18 79677287 79679358 - AC105036.3 chr15 75527150 75601205 - AL021707.1 chr22 38739003 38749041 + AL022311.1 chr22 37876148 37895563 + AL138963.1 chr13 45350323 45351350 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.