exRNAdisease

Entry Detail

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General Information

Database ID: exR0796838 RNA Name: RPL9 RNA Type: mRNA Chromosome: chr4 Starnd: - Coordinate: Start Site(bp): 39452521 End Site(bp): 39458949 External Links: ENSG00000163682

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCG2 chr4 88090150 88231628 - AC104581.2 chr17 7925931 7930622 - AC245033.1 chr15 82536788 82573194 - ACP1 chr2 264140 278283 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACYP1 chr14 75053237 75069483 - ADAM10 chr15 58588809 58749791 - ADAM17 chr2 9488486 9556732 - ADD1 chr4 2843857 2930076 + ADD3 chr10 109996368 110135565 + ADH5 chr4 99070978 99088801 - ADIPOR1 chr1 202940826 202958572 - ADORA2A chr22 24417879 24442357 + AGO2 chr8 140520156 140635633 - AL136454.1 chr1 192716132 192716653 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-146a-5p chr5 160485372 160485393 + hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007406.5 chr12 273954 277123 - AC009446.1 chr8 71675300 71702786 + AC016876.2 chr17 7581964 7584086 - AC067852.1 chr17 42536510 42562062 + AC087190.3 chr16 9104848 9113181 + AC145285.6 chr16 28822431 28823969 - AC245014.3 chr1 145281116 145281462 + AC245033.4 chr15 82533175 82540008 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.