exRNAdisease

Entry Detail

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General Information

Database ID: exR0796839 RNA Name: RPLP0 RNA Type: mRNA Chromosome: chr12 Starnd: - Coordinate: Start Site(bp): 120196699 End Site(bp): 120201235 External Links: ENSG00000089157

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC092718.3 chr16 81053587 81096296 - AC007192.1 chr19 18153158 18178117 + AC091167.2 chr15 90249556 90272208 + AC138811.2 chr16 18788063 18801519 - ACTR3 chr2 113890063 113962596 + ADGRA3 chr4 22345071 22516066 - ACTR5 chr20 38748460 38772520 + AL121594.1 chr14 35122549 35317474 + AGPAT5 chr8 6708642 6761503 + AARS2 chr6 44298731 44313347 - AGPAT3 chr21 43865223 43987592 + AL132671.2 chr6 117318211 117573571 - AC010422.3 chr19 12643831 12648397 - AL022238.4 chr22 40346529 40410054 + AK3 chr9 4709556 4742043 - ADNP chr20 50888916 50931437 - AC010323.1 chr19 8308283 8321379 - ABCF1 chr6 30571393 30597179 + AHCYL1 chr1 109984765 110023742 + AC011455.2 chr19 38915404 38949855 - AL136295.1 chr14 24189157 24213473 - AC011511.1 chr19 10305427 10316009 - AC006064.6 chr12 6556886 6607367 - AC005832.4 chr12 4604944 4662643 + ACTG1 chr17 81509971 81523847 - AC010463.1 chr19 17267418 17282966 + AL133352.1 chr10 100505628 100529881 - AKT1 chr14 104769349 104795751 - AL928654.3 chr14 105487199 105492267 + ACAT1 chr11 108116695 108147603 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3609 chr7 98881700 98881723 + hsa-miR-4426 chr1 192716333 192716349 + hsa-miR-6833-3p chr6 32179856 32179876 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002470.2 chr22 20979462 20998121 + AC007952.4 chr17 19112000 19112636 - AC008937.3 chr5 56927874 56929573 + AC010542.4 chr16 66549280 66551189 + AC010642.2 chr19 58309727 58327248 - AC010655.2 chr7 128455937 128469197 + AC010655.4 chr7 128455840 128493859 + AC010733.2 chr2 60925909 60931610 + AC020910.5 chr19 34733298 34733837 - AC023509.1 chr12 53441741 53467528 + AC026362.1 chr12 122975320 122982907 + AC064802.1 chr8 114282067 114295839 + AC068768.1 chr12 123262060 123262402 + AC073896.4 chr12 56162359 56190284 - AC104109.4 chr5 134205614 134371044 - AC105036.3 chr15 75527150 75601205 - AC109460.3 chr16 28974804 28990775 + AC147651.4 chr7 603185 608482 + AD000090.1 chr19 35557956 35581954 + ADD3-AS1 chr10 109940104 110008381 - AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.