exRNAdisease

Entry Detail

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General Information

Database ID: exR0796862 RNA Name: RPS15 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 1438358 End Site(bp): 1440494 External Links: ENSG00000115268

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD17A chr19 1876810 1885547 - AC004922.1 chr7 99325879 99394653 + AC010422.3 chr19 12643831 12648397 - AC011462.1 chr19 41350853 41425001 + AC099811.2 chr17 42119674 42154916 - AC124312.1 chr15 24955034 25000276 + ACOT13 chr6 24667035 24705065 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADO chr10 62804720 62808479 + AGPAT2 chr9 136673143 136687457 - AGPAT3 chr21 43865223 43987592 + AL136295.3 chr14 24120956 24131829 + AL139260.3 chr1 38864501 38881617 - AL928654.3 chr14 105487199 105492267 + ALDH5A1 chr6 24494867 24537207 + ALDH9A1 chr1 165662216 165698863 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + hsa-miR-155-3p chr21 25574022 25574043 + hsa-miR-7847-3p chr11 1880105 1880125 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002116.1 chr19 36008638 36014235 - AC004687.1 chr17 58330884 58332508 - AC005083.1 chr7 20217577 20221700 + AC009065.2 chr16 2235689 2236913 - AC009133.5 chr16 29808679 29812227 + AC016876.2 chr17 7581964 7584086 - AC027307.3 chr19 1440839 1441938 + AC090114.2 chr7 128524016 128531069 - AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.