exRNAdisease

Entry Detail

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General Information

Database ID: exR0796873 RNA Name: RPS24 RNA Type: mRNA Chromosome: chr10 Starnd: + Coordinate: Start Site(bp): 78033760 End Site(bp): 78056813 External Links: ENSG00000138326

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC4 chr13 95019835 95301475 - ABR chr17 1003518 1229738 - ABRACL chr6 139028745 139043302 + AC006030.1 chr2 74211604 74363377 - AC011462.1 chr19 41350853 41425001 + AC087289.3 chr17 75898645 75930129 - ACADM chr1 75724347 75787575 + ACBD3 chr1 226144679 226186741 - ACBD5 chr10 27195214 27242130 - ACO1 chr9 32384603 32454769 + ACTA1 chr1 229431245 229434098 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAM10 chr15 58588809 58749791 - ADSL chr22 40346500 40390463 + AFF1 chr4 86935002 87141054 + AGPAT3 chr21 43865223 43987592 + AGPS chr2 177392757 177559299 + AL022238.4 chr22 40346529 40410054 + AL133352.1 chr10 100505628 100529881 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC068768.1 chr12 123262060 123262402 + AC079781.5 chr7 97851688 97972985 - AC104461.1 chr1 200333193 200478669 + AC109460.3 chr16 28974804 28990775 + AL133346.1 chr6 131950946 132077393 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.