exRNAdisease

Entry Detail

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General Information

Database ID: exR0796883 RNA Name: RPS4X RNA Type: mRNA Chromosome: chrX Starnd: - Coordinate: Start Site(bp): 72255679 End Site(bp): 72277248 External Links: ENSG00000198034

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AGPAT3 chr21 43865223 43987592 + ALDOA chr16 30064164 30070457 + ACSL3 chr2 222860942 222944639 + ADAR chr1 154582057 154628013 - ACAA1 chr3 38103129 38137242 - AL022238.4 chr22 40346529 40410054 + AL136454.1 chr1 192716132 192716653 + ADSL chr22 40346500 40390463 + AKAP13 chr15 85380571 85749358 + ADTRP chr6 11712054 11807046 - ADA2 chr22 17178790 17258235 - ABCF2 chr7 151207837 151227166 - AC026464.4 chr16 69299682 69322700 + AC011530.1 chr19 45779437 45785973 - AL590764.2 chrX 71103987 71111575 - AKR1A1 chr1 45550543 45570049 + AASS chr7 122073549 122144255 - AC245033.1 chr15 82536788 82573194 - ADRM1 chr20 62302093 62308862 + AC010422.3 chr19 12643831 12648397 - ACAD9 chr3 128879596 128916067 + ACKR3 chr2 236567787 236582354 + AC010132.3 chr7 42909273 42932174 - AC139530.2 chr17 81703371 81720539 + ACAT1 chr11 108116695 108147603 + AC120057.2 chr17 7240427 7244635 - ACTB chr7 5527148 5563784 - ACIN1 chr14 23058564 23095614 - AC104452.1 chr3 49416777 49429314 - ACTG1 chr17 81509971 81523847 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + hsa-miR-3651 chr9 92292461 92292484 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006511.5 chr12 8014093 8019007 - AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - AC023509.1 chr12 53441741 53467528 + AC087190.3 chr16 9104848 9113181 + AC091564.7 chr11 6610883 6616594 - AC107959.2 chr8 23068229 23083619 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + AL118506.1 chr20 63861212 63864293 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.