exRNAdisease

Entry Detail

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General Information

Database ID: exR0796886 RNA Name: RPS5 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 58386400 End Site(bp): 58394806 External Links: ENSG00000083845

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AGFG2 chr7 100539203 100568220 + AL358113.1 chr9 69035747 69255187 + AKAP1 chr17 57085092 57121346 + ACO2 chr22 41469117 41528989 + AL022238.4 chr22 40346529 40410054 + AC004832.3 chr22 30409255 30428990 + AC007192.1 chr19 18153158 18178117 + AC139530.2 chr17 81703371 81720539 + AC010422.3 chr19 12643831 12648397 - AC092073.1 chr19 34396315 34409364 + AC040162.1 chr16 67929614 67936017 - ABRACL chr6 139028745 139043302 + ACTN4 chr19 38647649 38731589 + AHDC1 chr1 27534035 27604431 - AHCYL1 chr1 109984765 110023742 + AHCY chr20 34280268 34311802 - ACTR1B chr2 97655939 97664044 - ACTB chr7 5527148 5563784 - ALDOA chr16 30064164 30070457 + AK2 chr1 33007940 33080996 - AC008763.3 chr19 7678501 7682854 + AC002985.1 chr19 18907013 18934397 - AC011462.1 chr19 41350853 41425001 + ABHD10 chr3 111979010 111993368 + AC018523.2 chr11 14493783 14520344 - AC104452.1 chr3 49416777 49429314 - AHSA1 chr14 77457870 77469472 + ABCC1 chr16 15949577 16143074 + ADSL chr22 40346500 40390463 + AACS chr12 125065434 125143333 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1244 chr2 231713368 231713393 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC026362.1 chr12 122975320 122982907 + AC091564.7 chr11 6610883 6616594 - AC121761.1 chr12 75483454 75489820 - AD000090.1 chr19 35557956 35581954 + AL121832.3 chr20 62402236 62405935 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.