exRNAdisease

Entry Detail

---



General Information

Database ID: exR0796898 RNA Name: RPS8 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 44775251 End Site(bp): 44778779 External Links: ENSG00000142937

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACVR1B chr12 51951699 51997078 + AL021546.1 chr12 120438198 120460006 + AC073508.2 chr17 40627356 40665141 - AC008758.1 chr19 12461559 12551474 - ACAT1 chr11 108116695 108147603 + AC120057.2 chr17 7240427 7244635 - AC138811.2 chr16 18788063 18801519 - ADNP chr20 50888916 50931437 - AHCYL1 chr1 109984765 110023742 + AGL chr1 99850361 99924023 + ABI3 chr17 49210411 49223225 + ACTG1 chr17 81509971 81523847 - ACTR1B chr2 97655939 97664044 - ACTA2 chr10 88935074 88991339 - AL136295.5 chr14 24147548 24166452 + ABRACL chr6 139028745 139043302 + AKIRIN1 chr1 38991276 39006059 + AKT1 chr14 104769349 104795751 - ACTA1 chr1 229431245 229434098 - AL669918.1 chr6 32813767 32838822 - AHRR chr5 271670 438291 + ABCD4 chr14 74285269 74303055 - AGPAT3 chr21 43865223 43987592 + AEN chr15 88621337 88632281 + AC002985.1 chr19 18907013 18934397 - AKR7A2 chr1 19303965 19312146 - ADRM1 chr20 62302093 62308862 + AC022384.1 chr3 10249372 10285796 + ADAR chr1 154582057 154628013 - ADD1 chr4 2843857 2930076 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-92a-3p chrX 134169544 134169565 - hsa-miR-367-3p chr4 112647877 112647898 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC063949.2 chr12 92421531 92483680 + AC090772.3 chr18 24159509 24162211 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.