exRNAdisease

Entry Detail

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General Information

Database ID: exR0796974 RNA Name: RTN3 RNA Type: mRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 63681446 End Site(bp): 63759891 External Links: ENSG00000133318

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAGAB chr15 67200667 67255195 - ABCA3 chr16 2275881 2340746 - AC007192.1 chr19 18153158 18178117 + AC034102.2 chr12 56101331 56109289 + AC068946.2 chr2 219209772 219222738 - AC073508.2 chr17 40627356 40665141 - AC093525.1 chr16 2513965 2527955 + AC110275.1 chr8 43018424 43077334 + AC245033.1 chr15 82536788 82573194 - ACBD5 chr10 27195214 27242130 - ACTR2 chr2 65227753 65271253 + ADGRG6 chr6 142301854 142446266 + AGK chr7 141551278 141655244 + AHCTF1 chr1 246839098 246931967 - AKR1B1 chr7 134442356 134459284 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-185-5p chr22 20033153 20033174 + hsa-miR-1321 chrX 85835832 85835849 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005332.5 chr17 68133201 68135935 + AC104461.1 chr1 200333193 200478669 + AC125807.2 chr12 3041437 3044950 + AC245033.4 chr15 82533175 82540008 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.