exRNAdisease

Entry Detail

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General Information

Database ID: exR0797379 RNA Name: SFPQ RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 35176378 End Site(bp): 35193145 External Links: ENSG00000116560

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAAS chr12 53307456 53324864 - ABLIM1 chr10 114431113 114768061 - AC008982.1 chr19 38817471 38840178 - AC010422.3 chr19 12643831 12648397 - AC091551.1 chr18 50968019 51058144 + AC105052.3 chr7 102637049 102671641 - AC118553.2 chr1 99970011 100083321 + ACSS1 chr20 25006230 25058980 - ACTR2 chr2 65227753 65271253 + ADAMTSL4 chr1 150549369 150560937 + ADGRA3 chr4 22345071 22516066 - ADORA2A chr22 24417879 24442357 + AGO4 chr1 35808016 35857890 + AHCY chr20 34280268 34311802 - AKR1A1 chr1 45550543 45570049 + AL117339.5 chr10 38094368 38360098 + AL136295.5 chr14 24147548 24166452 + AL365205.1 chr6 41780349 41790141 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-205-5p chr1 209432166 209432187 + hsa-miR-3652 chr12 103930425 103930442 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006504.5 chr19 27793431 27984984 + AC067930.1 chr8 143579636 143580670 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.