exRNAdisease

Entry Detail

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General Information

Database ID: exR0797681 RNA Name: SLC25A3 RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 98593591 End Site(bp): 98606379 External Links: ENSG00000075415

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD17A chr19 1876810 1885547 - ABT1 chr6 26596953 26600739 + AC023055.1 chr12 55757275 55827546 - AC091167.2 chr15 90249556 90272208 + AC092835.1 chr2 95207535 95259774 + AC093525.2 chr16 2496032 2520218 + AC245033.1 chr15 82536788 82573194 - ACTA1 chr1 229431245 229434098 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTG2 chr2 73892314 73919865 + ACTR2 chr2 65227753 65271253 + ACY1 chr3 51983340 51989197 + ADIPOR1 chr1 202940826 202958572 - AHCY chr20 34280268 34311802 - AICDA chr12 8602170 8612867 - AKAP12 chr6 151239967 151358559 + AKIRIN1 chr1 38991276 39006059 + AL117348.2 chr1 225886696 225924278 - AL355315.1 chr10 97584374 97673910 + AL355987.1 chr9 136738167 136748453 - AL358113.1 chr9 69035747 69255187 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-205-5p chr1 209432166 209432187 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007406.5 chr12 273954 277123 - AC087239.1 chr12 25385670 25386241 - AC106886.2 chr16 30740667 30751381 + AC245014.3 chr1 145281116 145281462 + AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.