exRNAdisease

Entry Detail

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General Information

Database ID: exR0797982 RNA Name: SMG5 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 156249224 End Site(bp): 156282825 External Links: ENSG00000198952

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AACS chr12 125065434 125143333 + ABCA2 chr9 137007234 137028922 - ABL2 chr1 179099330 179229684 - AC105052.1 chr7 102582523 102642869 - ACTB chr7 5527148 5563784 - ACVR1B chr12 51951699 51997078 + ACVR2B chr3 38453890 38493142 + ADAR chr1 154582057 154628013 - AKAP12 chr6 151239967 151358559 + AKT2 chr19 40230317 40285536 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-28-5p chr3 188688794 188688815 + hsa-miR-214-3p chr1 172138816 172138837 - hsa-miR-149-5p chr2 240456015 240456037 + hsa-miR-532-3p chrX 50003204 50003225 + hsa-miR-708-5p chr11 79402077 79402099 - hsa-miR-873-5p chr9 28888925 28888945 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.