exRNAdisease

Entry Detail

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General Information

Database ID: exR0798050 RNA Name: SND1 RNA Type: mRNA Chromosome: chr7 Starnd: + Coordinate: Start Site(bp): 127652194 End Site(bp): 128092609 External Links: ENSG00000197157

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA1 chr9 104781006 104928155 - ABCF2 chr7 151207837 151227166 - AC005943.1 chr19 1578339 1605445 - AC010422.3 chr19 12643831 12648397 - AC011462.1 chr19 41350853 41425001 + AC020915.5 chr19 58228914 58315183 + AC073610.2 chr12 48903503 48957365 - AC092143.1 chr16 89919165 89936092 + AC124312.1 chr15 24955034 25000276 + AC245033.1 chr15 82536788 82573194 - ACTB chr7 5527148 5563784 - ACTR1B chr2 97655939 97664044 - ACTR2 chr2 65227753 65271253 + ADRM1 chr20 62302093 62308862 + ADSL chr22 40346500 40390463 + AGO1 chr1 35869808 35930532 + AGTRAP chr1 11736084 11754802 + AHCY chr20 34280268 34311802 - AL022238.4 chr22 40346529 40410054 + AL031708.1 chr16 1632259 1686715 + AL365205.1 chr6 41780349 41790141 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-18a-5p chr13 91350756 91350778 + hsa-miR-302b-3p chr4 112648489 112648511 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + AL049795.2 chr1 32170733 32176568 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.