exRNAdisease

Entry Detail

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General Information

Database ID: exR0798064 RNA Name: SNRPB RNA Type: mRNA Chromosome: chr20 Starnd: - Coordinate: Start Site(bp): 2461634 End Site(bp): 2470853 External Links: ENSG00000125835

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005258.1 chr19 2269525 2341172 + AC007192.1 chr19 18153158 18178117 + AC010422.3 chr19 12643831 12648397 - AC091551.1 chr18 50968019 51058144 + AC093525.2 chr16 2496032 2520218 + AC097637.1 chr3 52221081 52231190 - AC124312.1 chr15 24955034 25000276 + ACACA chr17 37084992 37406836 - ACIN1 chr14 23058564 23095614 - ACSF3 chr16 89088375 89164121 + ACTB chr7 5527148 5563784 - ACTC1 chr15 34790230 34795549 - ADAM10 chr15 58588809 58749791 - ADRA2C chr4 3766348 3768526 + AGRN chr1 1020120 1056118 + AKR1A1 chr1 45550543 45570049 + AL121845.3 chr20 63708864 63739103 + AL365205.1 chr6 41780349 41790141 + ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005618.1 chr5 141326210 141329357 + AC016876.2 chr17 7581964 7584086 - AC026362.1 chr12 122975320 122982907 + AC079781.5 chr7 97851688 97972985 - AC091564.7 chr11 6610883 6616594 - AC109460.3 chr16 28974804 28990775 + AL021707.1 chr22 38739003 38749041 + AL023803.2 chr20 38955910 38956547 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.